crunchclust

clustering software for 454 and Illumina sequence

The GitHub link for crunchclust is :

https://github.com/dumaatravaie/crunchclust

crunchclust is an efficient clustering algorithm that is capable of handling the most common Roche's 454 sequencing error ( Homopolymers ). It uses Levenshtein distance for sequence comparison during clustering. It is also used successfully for the clustering of Illumina Miseq sequences. The software is being developed by Dipankar Bachar and Prof. Richard Christen.

Paper: http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej201284a.html

Project Information

The project was created on Nov 22, 2011.

Labels:
Academic Cluster CPlusPlus Bioinformatics sequence