The PRIDE Toolsuite Project Just moved to GitHub

The PRIDE Toolsuite project has been moved to https://github.com/PRIDE-Toolsuite'>GitHub and divided in two main projects https://github.com/PRIDE-Toolsuite'>PRIDE Toolsuite and https://github.com/PRIDE-Utilities'>PRIDE Utilities, if you have are interested in new releases and the updated code. The libraries and code were organised in:

• PRIDE Inspector
• PRIDE mzGraph Browser
• PRIDE Quality Charts
• PRIDE Inspector Swing Utilities

• ms-data-core-api
• pride-utilities

Developed and supported by the PRIDE team.

Tools

PRIDE Inspector is an integrated desktop application for visualizinig and analyzing MS dataset (such as: mzML, PRIDE XML) as well as providing direct access to PRIDE public database. It also allows PRIDE submitters and journal reviewers to download private PRIDE experiments and perform quality checks. http://www.ebi.ac.uk/pride/resources/tools/inspector/latest/desktop/pride-inspector.zip'>Download latest release

PRIDE Converter converts mass spectrometry data from most common data formats into valid PRIDE XML for submission to the publicly available PRIDE database. It presents a convenient, wizard-like graphical user interface, and includes efficient access to the Ontology Lookup Service (OLS).

Libraries

PRIDE mzGraph Browser library lets you visualize MS spectra and chromatogram. This library also provides API for spectrum annotation.

PRIDE Quality Chart library provides a way to assess the quality of your MS experiments. Using this library, a number of quality charts can be generated which can allow quick quality checks on your dataset.

PRIDE XML JAXB library is a lightweight JAXB-based implementation of the full PRIDE XML 2.1 format. This library uses XML indexing technique to give both fast parsing of large PRIDE XML files and small memory footprint.

jmzML library is an implementation of the full PSI mzML 1.1 standard format based on JAXB. Like PRIDE XML JAXB library, this library also allows both fast parsing of large mzML files and small memory footprint.

jmzIdentML library is an implementation of the full PSI mzIdentML 1.1 standard format based on JAXB. Following the PRIDE XML JAXB library and the jmzML library, this API also allows both fast parsing of large mzIdentML files and small memory footprint.

XXIndex library lets you index a XML file quickly for random access.

PRIDE Utilities library contains code shared by many of projects, including the tools and libraries above.