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Project Information
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TagGDSoftware for creating synthetic DNA barcodes ("tags"), and for demultiplexing these, i.e. tracing them back, from actual sequenced DNA reads. ApplicationsTagGD contains two applications:
BenefitsThe benefits of TagGD compared to some other demultiplexing utilities are that:
ReferenceTagGD has been peer-reviewed and published here. ManualSee the multiplexer manual here. See the demultiplexer manual here. InstallationThe multiplexer is written in C++. See INSTALL and README in the corresponding folder for more information. NOTE: An older, more specialized version of the demultiplexer named "findIndexes" is also included. The most up-to-date demultiplexer is written in Python and Cython. See INSTALL and README in the corresponding folder for more information. ContactThe original TagGD was written by Paul Igor Costea and Pelin Sahlén (pelin.sahlen@scilifelab.se). Additions and rewrites have been made by Joel Sjöstrand (joel.sjostrand@sclifelab.se) and José Fernandez Navarro (jose.fernandez.navarro@scilifelab.se). |