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Project Information
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Main Prohits website is http://www.prohitsms.com/list.phpProhits was created and is maintained by Samuel Lunenfeld Research Institute at Mount Sinai Hospital. Please contact: http://www.prohitsms.com/Prohits_download/contact.php* ProHits - Implementation in Emili labThis is an implementation of ProHits at the Emili lab at the University of Toronto. ProHits is an open source software package (distributed under an Apache 2.0 license) designed to help scientists store, search and analyze mass spectrometry data. Although the platform is flexible and easily amenable to different types of projects, the system is designed to maximize the biological information from high-throughput protein-protein interaction experiments. The platform provides secure storage of mass spectrometry data, integration with search engines and mass spectrometry analytical tools (including Mascot, and the open source X!Tandem and TPP pipeline), and web-based queries of the results. An analysis module allows easy visualization of data, comparison of multiple experiments, and permits export to third-party software. A Cytoscape link provides added functionality and allows exploration of the results in a network view, with quantitative mass spectrometric information encoded and visualized as an edge attribute. ProHits also tracks all information required for deposition of the data into standards compliant public repositories, as well as for submission of manuscripts to standards compliant journals, and facilitate data export. |