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Dependencies of the project
Updated Apr 5, 2013 by aborgabor

This package is using the following components:

  • KNIME 2.1.0 or above (The first screencast helps you to install it.)
    • You will need to install the KNIME math expression extension (JEP) too.
  • KNIME Labs's KNIME Distance Matrix Feature 2.1.0 or above
  • KNIME Labs's KNIME image processing feature 2.1.1 or above - optional
  • R 2.8.x, 2.9.x, 2.10.x, 2.11.x or 2.12.x (help to install and setup R)
  • CellHTS2 2.6.x, 2.8.x, 2.10.x, 2.12.x or 2.14.x (recommends locfit) (help to install and setup CellHTS2)
  • Rserve 0.6.0 or later (help to install and setup Rserve) (Might work with 0.5.2 too.)
  • Java SE 6 (SUN JRE 6 update 10 and above have very annoying UI problems with KNIME under MS Windows, Linux, so those are not recommended; the one is included with the KNIME installation is mostly OK, so you do not have to download anything. Although the Sun JRE 6 update 14 and above looks really good, so you might consider using it.)

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