| Issue 18: | CellHTS2 node not woking / causes Rserve to shutdown | |
| 2 people starred this issue and may be notified of changes. | Back to list |
What steps will reproduce the problem? 1. When launching the sample1 example after mapping all files from the svn/plate8 location, when launching the node cellHTS2, the Rserver starts working (loading libraries etc), but terminates, without completing. 2. 3. What is the expected output? What do you see instead? Not sure yet. It also appears that the screen log provided in the SVN is empty, although I am not sure whether it optional, and what it is exactly for. What version of the product are you using? On what operating system? R2.9.0, followed installation procedure described in the wiki. Surprisingly, I get a different output than expected with for the R library "cellHTS2": > library("cellHTS2") Loading required package: RColorBrewer Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: genefilter Loading required package: splots Loading required package: grid Loading required package: vsn Loading required package: hwriter Scalable Robust Estimators with High Breakdown Point (version 0.5-01) Please provide any additional information below. Wen installing cellHTS2 in R I get the folwing message which seems to have some errors (inparticular with some incompatibilities between bioconductor and R2.9.0): > source("http://bioconductor.org/biocLite.R") > biocLite("cellHTS2") Running biocinstall version 2.4.10 with R version 2.9.0 Your version of R requires version 2.4 of Bioconductor. Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.9 trying URL 'http://bioconductor.org/packages/2.4/bioc/bin/windows/contrib/2.9/cell HTS2_2.8.0.zip' Content type 'application/zip' length 3702776 bytes (3.5 Mb) opened URL downloaded 3.5 Mb package 'cellHTS2' successfully unpacked and MD5 sums checked The downloaded packages are in C:\Users\ghislain\AppData\Local\Temp\Rtmp4bKnjq\downloaded_packages updating HTML package descriptions
Apr 29, 2009
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Summary:
CellHTS2 node not woking / causes Rserve to shutdown
Labels: -Milestone-Release1.0 Milestone-Release0.3
May 14, 2009
Hope the new version (2.8.0), and the previous one (2.6.0) is working well with the actual version from SVN. Soon (within 2 weeks?) it will be released.
Status:
Fixed
Owner: aborgabor
May 14, 2009
Great news. I look forward to using this! |
Labels: -Priority-Medium Priority-Critical Milestone-Release1.0