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Updated Apr 7, 2010 by Emilis.K...@gmail.com

Introduction

This is an instructions for testing, building and developing ebuild modules generator for R language.

Prerequirements

fortran f77 compiler (gcc with "fortran" USE flag)

Configuration

The first thing you need to do is add dev-R category for portage database # echo "dev-R" > /etc/portage/categories

The second thing you need to do is change or add the SYNC variable in /etc/make.conf SYNC="rsync://193.219.145.204/gentoo-portage"

And finally the last thing you need to do is gentoo portage resync # emerge --sync

Testing

Adding components to R is done in this way: emerge package_name

where package_name is one of supported packages listed below.

Packages supported

aCGH.Spline adk amer archetypes asd aaMI adlift anacor argosfilter ash abind ads analogue arm aspace accuracy afc anapuce aroma.affymetrix aspect acepack agce anchors aroma.apd aster actuar agilp animation aroma.core asuR ada agricolae anm aroma.light asympTest adabag agsemisc ant arrayImpute asypow adaptTest akima aod arrayMissPattern atmi ade4 allelic apTreeshape ars audio ade4TkGUI alphahull apcluster arules automap adegenet alr3 ape arulesNBMiner aws adehabitat amap aplpack arulesSequences aylmer adephylo amba approximator asbio adimpro amei apsrtable ascii

Details

The script isn't done yet. This is small to do list:

  • Create dependencies support
  • Disable packages inserted in default R package support
  • Disable packages for other platforms (some are onely for windows)
  • Testing test as much as possible

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