What steps will reproduce the problem? 1. Run Make on ubuntu 2. 3.

What is the expected output? What do you see instead? Compilation

What version of the product are you using? On what operating system? STAR_2.3.0e.tgz

Please provide any additional information below.

Oops, I can't reedit my post. The error message I received is the following:

g++ -c -O3 -Wall -Wextra -fopenmp -D'SVN_VERSION_COMPILED="STAR_2.3.0e_r291"' -D'COMPILATION_TIME_PLACE="Wed Sep 25 11:24:00 CEST 2013 :/usr/remote/src/STAR_2.3.0e"' Genome.cpp Genome.cpp: In member function 'void Genome::genomeLoad(Parameters*)': Genome.cpp:157:21: error: 'sleep' was not declared in this scope make: * [Genome.o] Error 1

I found a fix for Genome.h, add the following at line 6:

include

Or as a .diff:

6a7

include

Please try the latest patch: ftp://ftp2.cshl.edu/gingeraslab/tracks/STARrelease/Alpha/STAR_2.3.1q.tgz I believe this problem has been fixed. Thanks!

When will the next release be made? I found this problem in the current release.