chimerascan

ID Status Summary
26 New File "/usr/bin/chimerascan_run.py", line 24, in <module> Type-Defect Priority-Medium
25 New bowtie-build failed to create alignment index Type-Defect Priority-Medium
24 New Different length reads for R1 and R2 Type-Defect Priority-Medium
23 New easy to fix linker error on some systems including macosx Type-Defect Priority-Medium
22 New Crashed with error "'bowtie-build' failed to create breakpoint index" Type-Defect Priority-Medium
21 New IOError: [Errno 24] Too many open files: Type-Defect Priority-Medium
20 New Detail about output file Type-Defect Priority-Medium
19 New CHIMERASCAN 0.4.5 runs for hours then gets killed by my system Type-Defect Priority-Medium
18 New Sudden crash during runtime Type-Defect Priority-Medium
17 New crash after "Extracting single-mapped reads that may span breakpoints" Type-Defect Priority-Medium
16 New Detailed explanation of chimerascan output Type-Defect Priority-Medium
15 New csamtools error Type-Defect Priority-Medium
14 New new feature? possibility of running the filter chimeras as a stand alone step? Type-Defect Priority-Medium
13 Verified Interconvert between transcriptomic and genomic coordinates Type-Task Priority-Medium
12 Verified Provide chimeric reads as a BAM file Type-Enhancement Priority-High
11 Fixed Fragment size in "detecting discordant reads" step Type-Enhancement Priority-High
10 WontFix Test performance with BWA aligner Type-Enhancement Priority-Medium
9 Accepted Add sequences for Poly-A+ tails Type-Enhancement Priority-Medium
8 Fixed chimerascan_html_table.py problem Type-Defect Priority-Medium
7 Fixed run from gzipped fastq files Type-Enhancement Priority-Medium
6 Accepted Dynamic read trimming of poor quality reads Type-Enhancement Priority-Medium
5 Fixed Use breakpoint homology to refine junction spanning read counts Type-Enhancement Priority-Medium
4 WontFix Indel and rearrangement calling Type-Enhancement Priority-Low
3 Done Improve localization of 5' and 3' exons Type-Enhancement Priority-Medium
2 Invalid Improvement when joining segments Type-Enhancement Priority-Medium
1 Accepted Support for variable read lengths Type-Task Priority-Medium