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Add text box for definition comment #32

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hdietze opened this issue Apr 6, 2015 · 5 comments
Closed

Add text box for definition comment #32

hdietze opened this issue Apr 6, 2015 · 5 comments

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@hdietze
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hdietze commented Apr 6, 2015

Original issue 32 created by hdietze on 2013-11-14T20:34:10.000Z:

Hi,

As discussed at today's editors call
(http://wiki.geneontology.org/index.php/Ontology_meeting_2013-11-14#TG_feature_requests, point 2)
could you please add a text box in both the TG template and the TG free form, so curators can leave notes for themselves. This would appear as a definition comment in the ontology. On top of the text box, we should indicate that the comment will be made public, and request that the comment is entered in the following format:
"An example of this is [name of gene product, such as LysZ] in [species name] [then add UniProt symbol here] in PMID:xxx. [add evidence code here]"
TG reviewers will simply have to strip off the evidence code.

Thanks,
Paola

@hdietze
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hdietze commented Apr 6, 2015

Comment #1 originally posted by hdietze on 2013-11-18T22:20:00.000Z:

All templates in the GO instance of TermGenie have now a new input field called 'Public Comment'. The content will be added as an comment stanza to the term. Additional there is a hint that the content of this field is visible to everyone.
Should the hint be changed to the pattern for a comment template?

@hdietze
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hdietze commented Apr 6, 2015

Comment #2 originally posted by hdietze on 2013-11-19T15:23:15.000Z:

Thanks Heiko. Could you please do the following:

  1. Write "Optional" on top of "Public Comments" (similarly to DefX_Ref)

  2. Change "Public Comments" into "Public definition comment" (singular)

  3. Change the current hint into the following:
    "Text entered here will appear as a definition comment in the ontology and will be visible in GO browsers. If you wish to use this option, please use the following format: "An example of this is [name of gene product, such as LysZ] in [species name, such as E. coli] [then add UniProt symbol here] in PMID:xxx. [add evidence code here]"

I know it's a bit long but hopefully it can fit! Thanks,
Paola

@hdietze
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hdietze commented Apr 6, 2015

Comment #3 originally posted by hdietze on 2013-11-19T21:59:23.000Z:

Made some changes. (# 0) is not so easy, would require a deeper change. Added it to the hint. I have shortened the description text for # 2. # 1 done.

@hdietze
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hdietze commented Apr 6, 2015

Comment #4 originally posted by hdietze on 2013-11-20T07:46:12.000Z:

Thanks Heiko!

For no.0, we could solve it by changing
"Public definition comment"
into
"Optional: public definition comment"
if that's possible?

All rest looks good.
Thanks,
Paola

@hdietze
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hdietze commented Apr 6, 2015

Comment #5 originally posted by hdietze on 2013-11-21T21:23:48.000Z:

The field is now called "Optional: public definition comment"

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