Issues - segtools - Exploratory data analysis of genomic segmentations

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1 - 21 of 21

ID ▼	Type ▼	Status ▼	Priority ▼	Milestone ▼	Owner ▼	Summary + Labels ▼
2	Enhancement	New	Low	----	hoffman...@gmail.com	File processing error handling should print line number
3	Enhancement	New	Medium	----	hoffman...@gmail.com	Make aggregating by groups the default behavior
5	----	New	----	----	----	Segtools FAQ
6	----	New	----	----	----	Link Segtools listserv archive from project page
9	Defect	Accepted	High	----	----	Signal-distribution assumes signal values are integers
10	Defect	Accepted	Low	----	hoffman...@gmail.com	segtools-aggregation reports all zeros in gene mode on some GTF files instead of producing a warning or error
11	Defect	New	Medium	----	----	Parsing failure for blank lines in a BED file
12	Enhancement	Accepted	Medium	----	----	Signal-distribution "# data points read from segmentation tracks" is confusing
13	Enhancement	Accepted	Medium	----	----	Docs should clearly describe the output from signal-distribution
14	Defect	Accepted	Medium	----	----	signal-distribution reference to "normalization" is actually "standardization"
15	Enhancement	Accepted	Medium	----	----	signal-distribution should have --row-standardize flag
16	Enhancement	Accepted	Low	----	----	Single simple font-size option to command line calls
17	----	New	----	----	----	Segtools header should report the number of labels
18	Defect	New	Medium	----	----	Error in signal-distribution standard deviation calculation
19	Defect	Accepted	Medium	----	hoffman...@gmail.com	Using fully-qualified path names with -o leads to HTML files that don't work
20	Enhancement	Accepted	Medium	----	hoffman...@gmail.com	signal-distribution should split into more granular parts
21	Defect	New	Medium	----	----	Test suite needs updating?
22	Defect	New	Medium	----	----	Identify requires params/input.master present in identifydir
23	Defect	New	Medium	----	----	R png() require X11 and fail in queued jobs
24	Defect	New	Medium	----	----	R error: "nlabels not found" in version 1.1.9
25	Defect	New	Medium	----	----	segtools-signal-distribution reporting statistics for wrong labels

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1 - 21 of 21

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