This plugin allows extracting Celldesigner model information, storing this information to a Semantic Mediawiki server and context-sensitive restoring and integration of this information in a Celldesigner model. The application consists of two parts: The Celldesigner-plugin itself which directly communicates with the Celldesigner and so has access to the Celldesigner models and the Translationserver which receives the extracted information and translates it into Semantic Mediawiki syntax and stores it there.

The plugin was designed for Celldesigner 4.1beta. It was tested on a system running Mediawiki 1.15.1 with MySQL 5.0.26-Max, PHP 5.1.2 and the Semantic Mediawiki extension 1.5g-SVN. It currently supports english and german versions of Semantic Mediawiki. If the Mediawiki is configured to another language, according adaptions have to be made to the class Languages.LanguageSpecs in the Translationserver.

The SBML2SMW project was initiated and funded by Merck KGaA, Darmstadt, Germany and executed by fluid Operations AG.

Find out more about the scientific background of the SBML2SMW project, and read our publications