pysam

Python interface for the SAM/BAM sequence alignment and mapping format

Pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix. To install, type:

pip install pysam

Pysam development has moved to github.

Project Information

Labels:
Python Bioinformatics samtools SAMBAM Sequence alignment