012912

BACK! After a bit of a hiatus on other code projects, I am back to editing and adding features to phyutility. Please stay tuned for more updates.

070409

Uploaded new .jar file for phyutility. Please download this and replace your existing phyutility.jar file (of course, if yours is named Phyutility.jar, change the name of the new file to reflect that). If you haven't downloaded phyutility package before, please download both and replace the .jar in the folder with the new one. More features soon!

022808

We now have a publication that can be cited when using phyutility: Smith, S. A. and Dunn, C. W. (2008) Phyutility: a phyloinformatics tool for trees, alignments, and molecular data. Bioinformatics. 24: 715-716. The paper can be found here.

112007

Release 2.2 has been uploaded with many bug fixes.

111307

SVN has been updated with source code. Instructions will appear in the WIKI for downloading and using with Eclipse.

101607

Sources for the new release have been posted. I will have updates to the sources in the SVN repository soon enough, but until then the source package has everything.

100907

A new release which includes database functionality has been uploaded (2.1). Please report problems in the Issues section. Also, info will be added in the Wiki to accompany the manual (HOWTOs).

081607

An alpha download has been posted in the downloads section. Use with great caution. Also be sure to post any issues in the issues section.

081607

A second alpha download has been posted in the downloads section. Use with great caution. Also be sure to post any issues in the issues section. This second alpha includes NCBI functions, including searching and fetching from nucleotide databases.