Here lies information for functionality to be added (or currently being added) to Phyutility. To suggest something, simply leave a comment here or submit a "Feature Enhancement" in the issues section.

Planned for upcoming release in Phyutility 2.2.1

• Prune whole clades and save pruned portion to a file and insert placeholder into the main tree
• Graft clades into tree
• Remove branch lengths
• Remove internal names
• Create partition (charset) block after concat command

Long term plans

• Faster database creation and ability to reuse database without reloading data
• Simple visualization of all or portions of the tree
• Integration of reverse complement and alignment procedures
• Integration of clustering algorithms
• Lineage through time (accommodating for uncertainty)
• Simple character reconstruction with branches colored for use with figtree