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<menuset name="PhyloWidget Menus">
	<menu type="Toolbar" x="2" y="2">
	<item name="File" description="">
		<item name="New Tree" action="treeNew" shortcut="control-n"/>
		<item name="Load Tree">
			<item name="From File..." action="treeLoad" condition="canReadFiles"/>
			<item name="Manual Input..." action="treeInput"/>
		</item>
		<item name="Save Tree..." action="treeSave" condition="canWriteFiles"/>
		<item name="Export Image..." action="fileOutput" condition="canWriteFiles"/>
	</item>
	<item name="View">
		<item name="Zoom to Full" action="zoomToFull" shortcut="control-F"/>
		<item name="Layout">
			<item name="Rectangular" action="viewRectangular" shortcut="control-1"/>
			<item name="Diagonal" action="viewDiagonal" shortcut="control-2"/>
			<item name="Circular" action="viewCircular" shortcut="control-3"/>
			<item name="Unrooted" action="viewUnrooted" shortcut="control-4"/>
			<item name="Options">
				<item name="Branch Scaling" type="NumberScroller" property="branchScaling" increment="0.05" min="0.01" max="30" format="0.00"/>
				<item name="Layout Angle" type="NumberScroller" property="layoutAngle" increment="1" min="-360" max="360" format="0.0"/>
			</item>
		</item>
		<item name="Rendering">
			<!-- DEPRECATED: 
				<item name="Render Threshold" type="NumberScroller" property="renderThreshold" increment="5" min="5" max="2000"/>
				<item name="Branch Length Scaling" type="NumberScroller" property="branchLengthScaling" increment="0.05" min="0" max="10" />
				<item name="Stretch to Fit" type="CheckBox" methodCall="setStretchToFit" />
			-->
			<item name="Minimum Text Size" type="NumberScroller" property="minTextSize" increment =".1" min="0" max="72" format="0.0"/>
			<item name="Show Clade Labels" type="CheckBox" property="showCladeLabels" />
			<item name="Antialias" type="CheckBox" property="antialias" />
		</item>
		<item name="Style">
			<item name="Text Size" type="NumberScroller" property="textScaling" increment=".025" min="0" max="10" format="0.00"/>
			<item name="Node Size" type="NumberScroller" property="nodeSize" increment ="0.05" min="0" max="50" format="0.00"/>
			<item name="Line Size" type="NumberScroller" property="lineWidth" increment ="0.05" min="0" max="50" format="0.00"/>
			<item name="Text Angle" type="NumberScroller" property="textRotation" increment=".2" min="-60" max="60" format="0.0"/>
		</item>
		<item name="Show all" type="CheckBox" methodCall="setShowAllLabels"/>
		<item name="Branch Lengths" type="CheckBox" methodCall="setUseBranchLengths" value = "false" shortcut="ctrl-b" />
	</item>
	<item name="Tree">
		<item name="Mutator">
			<item name="Mutate Once" action="treeMutateOnce" shortcut="control-M"/>
			<item name="Mutate Slow" action="treeMutateSlow"/>
			<item name="Mutate Fast" action="treeMutateFast"/>
			<item name="Stop Mutating" action="treeStopMutating" shortcut="control-shift-m"/>
		</item>
		<item name="Structure">
			<item name="Align all Leaves" action="treeAlignLeaves" shortcut="control-shift-A"/>
			<item name="Flip Tree" action="treeFlip" shortcut="control-R"/>
			<item name="Auto-sort Tree" action="treeAutoSort" shortcut="control-L"/>
			<item name="Remove Elbow Nodes" action="treeRemoveElbows" shortcut="control-E"/>		
		</item>
		<item name="Annotation">
			<item name="Enforce Unique Labels" type="CheckBox" methodCall="setEnforceUniqueLabels"/>
			<item name="Ignore Annotations" type="CheckBox" property="ignoreAnnotations"/>
			<item name="Load Google Images" action="treeLoadImages" condition="canAccessInternet"/>
		</item>
	</item>
	<item type="Spacer" spaceWidth="5" />
	<item type="org.phylowidget.ui.SearchBox" name="Search:" width="130" />
</menu>

	<!-- If you want the user to be able to interact with the tree AT ALL (including through the context menu),
		then you must have a ToolDock with the associated tools. You can set the "hidden" attribute of the
		ToolDock element to "True" if you want to have the tools but keep the dock hidden. -->
	<menu name="dock" type="ToolDock" width="30" rotation="left" hidden="true">
	<!-- the "rotation" parameter can have the values: left, right, top, bottom -->
		<item name="Arrow" tool="Arrow" shortcut="a" icon="dock/arrow.png"/>
		<item name="Scroll" tool="Scroll" shortcut="s" icon="dock/grab.png"/>
		<item name="Zoom" tool="Zoom" shortcut="z" icon="dock/zoom.png"/>
		
		<!-- Look at this nifty methodcall tag! Not worth the effort, you say? I probably agree. --> 
		<methodcall method="selectTool" param="Arrow"/>
	</menu>

	<menu name="context" type="org.phylowidget.ui.PhyloContextMenu">
		<item name="Tree Edit" hint="t">
			<item name="Add" hint="a">
				<item name="Child" action="nodeAddChild" hint="c"/>
				<item name="Sister" action="nodeAddSister" hint="s"/>
			</item>
			<item name="Delete" hint="d">
				<item name="This node" action="nodeDelete" hint="t"/>
				<item name="Subtree" action="nodeDeleteSubtree" hint="s"/>
			</item>
		</item>
		<item name="Layout" hint="a">
			<item name="Reroot" action="nodeReroot" hint="r"/>
			<item name="Flip subtree" action="nodeFlipSubtree" hint="f"/>
			<item name="Switch children" action="nodeSwitchChildren" hint="s"/>
		</item>
		<item name="Clipboard" hint="c">
			<item name="Cut" action="nodeCut" hint="x"/>
			<item name="Copy" action="nodeCopy" hint="c"/>
			<item name="Paste" action="nodePaste" hint="v"/>
			<item name="Swap" action="nodeSwap" hint="s"/>
			<item name="Clear" action="nodeClearClipboard" hint="r"/>
		</item>
		<item name="Node Edit" hint="e">
			<item name="Name" action="nodeEditName" hint="n"/>
			<item name="Branch length" action="nodeEditBranchLength" hint="b"/>
		</item>
	</menu>
</menuset>