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Updated Feb 18, 2015 by

# Semantic Similarity in OWL


The OWLTools project has moved to the @owlcollab on github, see owlcollab/owltools

This wiki page has moved here: Owl Sim on github

The following documentation may be out of date:


The OWLSim package provides the ability to do a number of standard semantic similarity methods and includes novel methods for combining these with dynamic selection of anonymous grouping classes.


Running from command line



Programmer Documentation


  • Nicole L Washington, Melissa A Haendel, Christopher J Mungall, Michael Ashburner, Monte Westerfield, and Suzanna E. Lewis. Linking Human Diseases to Animal Models using Ontology-based Phenotype Annotation. PLoS Biology, 7(11), 2009) HTML
  • Chen, C.-K., Mungall, C. J., Gkoutos, G. V., Doelken, S. C., Köhler, S., Ruef, B. J., Smith, C., et al. (2012). MouseFinder: Candidate disease genes from mouse phenotype data. Human mutation, 33(5), 858-66. doi:10.1002/humu.22051
Comment by, Mar 20, 2015

could explain more deeply, then what?

Comment by, Apr 23, 2015

comparisons between human and animal eyes turned out almost the same. Love you arbi.fani from Hardiyan Kesuma Ramadhan

Comment by, May 8, 2015

Noted for your notification. Thanks.

Bisnis ibu rumah tangga yang menguntungkan

Comment by, Jun 12, 2015

could explain more deeply,

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