Introduction

This GUI is just a wrapper over the OpenBiomind. It provides a convenient way of executing various tasks supported by OpenBiomind. In addition, it also provides a few advanced options to chain multiple tasks together (please see the list of features for details). Following is a brief description about the user interface. The interface primarily consists following two views in addition to the main editor area. If you ever close these views and want to open them again, then you can do that by selecting Show View option from the Window menu.

Results

This view shows all the results. Once a task is executed, a new folder for that task is created and it is shown in this view. This folder contains following items:

• Folder <task.Name>, where Name is the name of the task that you executed contains the following two folders
• Folder input contains links to all the input files and directories for that task
• Folder output contains links to all the output files and directories for that task
• If Graphviz dot utility is set in the preferences and if the output contains dot files, then the automatically generated image is stored as a file, and NOT as a link
• File execution.log contains the output generated while executing the tasks

Console

This view shows the executed tasks, the actual Java command that can be used to execute the task and the errors generated by OpenBiomind. Occasionally, it may also list other useful information.