Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

dbxref lists are concatenated instead of comma-separated #10

Closed
GoogleCodeExporter opened this issue Mar 12, 2015 · 1 comment
Closed

Comments

@GoogleCodeExporter
Copy link

I performed a OBO > OWL > OBO round trip test. An input stanza like this:

[Term]
id: HAO:0000074
name: solid compound organ
def: "Compound organ that does not contain macroscopic anatomical spaces." 
[HAO:ref "Haendel, M. A., F. Neuhaus, D. Osumi-Sutherland, P. M. Mabee, J. L. 
V. Mejino, C. J. Mungall, and B. Smith. 2008. CARO - The Common Anatomy 
Reference Ontology. Pp. 311-333 in: Anatomy Ontologies for Bioinformatics: 
Principles and Practice; Burger, A, Davidson, D, Baldock, R (Eds.). Springer. 
356 pp.", ISBN:978-1-84628-88, 
http://bioontology.org/wiki/index.php/CARO:Main_Page]
xref: CARO:0000074
is_a: HAO:0000024 ! compound organ

becomes (after translating to OWL and then translating back to OBO):

[Term]
id: HAO:0000074
xref: CARO:0000074 
name: solid compound organ 
def: "Compound organ that does not contain macroscopic anatomical spaces." 
[HAO:refISBN:978-1-84628-88http://bioontology.org/wiki/index.php/CARO:Main_Page]
is_a: HAO:0000024 

You can see that the three definition xrefs are concatenated in the new term 
stanza.

Original issue reported on code.google.com by balh...@nescent.org on 28 Feb 2011 at 8:47

@GoogleCodeExporter
Copy link
Author

Fixed.

Original comment by balh...@nescent.org on 28 Feb 2011 at 8:59

  • Changed state: Fixed

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant