Knime4Bio is a set of custom nodes for the KNIME (The Konstanz Information Miner) graphical workbench, for analysing NGS data without the requirement of programming skills.

Watch the video

http://www.youtube.com/watch?v=zPdcbybEnSM

Using Knime4Bio

• Install Knime4Bio
• Read the Wiki
• Look some examples in the wiki:
• ExampleWorkflow01
• UseCase20110801
• UseCase20110729
• UseCase20110808
• Haploinsufficiency
• Notch2 (Workflow available on myexperiment)

Reference

Knime4Bio: a set of custom nodes for the interpretation of Next Generation Sequencing data with KNIME.
http://bioinformatics.oxfordjournals.org/content/early/2011/10/07/bioinformatics.btr554.abstract
   Pierre Lindenbaum, Solena Le Scouarnec, Vincent Portero and Richard Redon

Authors

Pierre Lindenbaum	Solena Le Scouarnec	Vincent Portero	Richard Redon

Affiliations

• Institut du thorax, Inserm UMR 915, Centre Hospitalier Universitaire de Nantes, 44000 Nantes, France.
• The Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.