This package implements two significance tests for comparing digital gene expression profiles, described in the article:

Varuzza et al. "Significance tests for comparing digital gene expression profiles" (unpublished, preprint available).

They provide two programs: Kemp for the frequentist test and Basu for the Bayesian test, and some auxiliary scripts. The source code is available in the download section. Instructions for compiling and running are available in the README.

A large example dataset is provided with the latest version of the source code. This example is also provided in the downloads section of this site: GSE6677.

MS Windows

To install KempBasu on MS Windows, please read Windows Install Instructions.

Supplementary Material

Supplementary material for the article:

• Coefficients of cutoff functions