Various PERL scripts that I have written for processing bioinformatics data as well as general PERL subfunctions that I use. These scripts are all intended to be stand alone programs with most having a command line interface. Some of these scripts rely on the bioperl library.

I use all of these programs from the linux command line. I have all of the programs in a 'jperl' directory. I have the full path to this directory defined in my bashrc so that I can easily use them from anywhere.

I am also adding a number of programs that I have written that have no other home on the web. These generally all fall under the category of bioinformatics programs.

Availability

You can go to the project index to see the list of all programs that are available for download. The most recent programs are available from the project source repository.