This is the Eoulsan git reference repository.

Eoulsan is a versatile framework based on the Hadoop implementation of the MapReduce algorithm, dedicated to high throughput sequencing data analysis on distributed computers. With Eoulsan, users can easily set up a cloud computing cluster and automate the analysis of several samples at once using various software solutions available. Working either on standalone workstations or cloud computing clusters, Eoulsan provides an integrated and flexible solution for RNA-Seq data analysis of differential expression.

Here is a quick access to the main pages:

• Install Eoulsan
• New user's tutorials:
  • Bulk RNA-seq data
  • Bulk RNA-seq long read data (Nanopore)
  • Single cell RNA-seq (Smart-Seq2)
  • Single cell RNA-seq (10x Genomics)
• Reference website to get the complete documentation.
• Developers wiki to get information on how to contribute to the Eoulsan project and develop plug-ins.