anatomy

caret

Caret (Computerized Anatomical Reconstruction and Editing Toolkit) is designed for interactively viewing, manipulating, and analyzing surface reconstructions of the cerebral and cerebellar cortex.

function

spm

Statistical Parametric Mapping refers to the construction and assessment of spatially extended statistical processes used to test hypotheses about functional imaging data. These ideas have been instantiated in software that is called SPM. The SPM software package has been designed for the analysis of brain imaging data sequences. The sequences can be a series of images from different cohorts, or time-series from the same subject. The current release is designed for the analysis of fMRI, PET, SPECT, EEG and MEG.

fsl

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain ... FSL runs on Apple, PCs (Linux and Windows) and Sun, and is very easy to install. ...

afni

AFNI (which might be an acronym for Analyis of Functional NeuroImages) is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It runs on Unix+X11+Motif systems, including SGI, Solaris, Linux, and Mac OS X. It is available free (in C source code format, and some precompiled binaries) for research purposes.