Older

• Nov 17, 2008

  r54 (entered streaming constants because for some reason they are...) committed by lskatz   -   entered streaming constants because for some reason they aren't defined when using apache

  entered streaming constants because for some reason they aren't defined when using apache
• Nov 17, 2008

  r53 (entered streaming constants because for some reason they are...) committed by lskatz   -   entered streaming constants because for some reason they aren't defined when using apache

  entered streaming constants because for some reason they aren't defined when using apache
• Nov 17, 2008

  r52 (entered streaming constants because for some reason they are...) committed by lskatz   -   entered streaming constants because for some reason they aren't defined when using apache

  entered streaming constants because for some reason they aren't defined when using apache
• Nov 17, 2008

  r51 (entered streaming constants because for some reason they are...) committed by lskatz   -   entered streaming constants because for some reason they aren't defined when using apache

  entered streaming constants because for some reason they aren't defined when using apache
• Nov 17, 2008

  r50 (trying to cascade any SeqIO options to Seq) committed by lskatz   -   trying to cascade any SeqIO options to Seq

  trying to cascade any SeqIO options to Seq
• Nov 17, 2008

  r49 (updated how fastas are parsed. Now using preg_split instead...) committed by lskatz   -   updated how fastas are parsed. Now using preg_split instead of preg_match.

  updated how fastas are parsed. Now using preg_split instead of preg_match.
• Nov 17, 2008

  r48 (updated how fastas are parsed. Now using preg_split instead...) committed by lskatz   -   updated how fastas are parsed. Now using preg_split instead of preg_match.

  updated how fastas are parsed. Now using preg_split instead of preg_match.
• Nov 05, 2008

  r47 (why did I remove file_put_contents before...? Well, I put i...) committed by lskatz   -   why did I remove file_put_contents before...? Well, I put it back.

  why did I remove file_put_contents before...? Well, I put it back.
• Nov 05, 2008

  r46 ([No log message]) committed by lskatz   -   [No log message]

  [No log message]
• Nov 05, 2008

  r45 (fixing writeTemporaryFile...) committed by lskatz   -   fixing writeTemporaryFile...

  fixing writeTemporaryFile...
• Nov 05, 2008

  r44 (fixing writeTemporaryFile...) committed by lskatz   -   fixing writeTemporaryFile...

  fixing writeTemporaryFile...
• Nov 05, 2008

  r43 (updated instances of writeTemporaryFile to match the new par...) committed by lskatz   -   updated instances of writeTemporaryFile to match the new parameters

  updated instances of writeTemporaryFile to match the new parameters
• Nov 05, 2008

  r42 (I found the function tempnam and introduced it for writing t...) committed by lskatz   -   I found the function tempnam and introduced it for writing temporary files in the method writeTemporaryFile.

  I found the function tempnam and introduced it for writing temporary files in the method writeTemporaryFile.
• Oct 28, 2008

  r41 (not checking for proteins ) committed by lskatz   -   not checking for proteins

  not checking for proteins
• Oct 28, 2008

  r40 (Not double checking anymore if a seq is a protein seq.) committed by lskatz   -   Not double checking anymore if a seq is a protein seq.

  Not double checking anymore if a seq is a protein seq.
• Oct 28, 2008

  r39 (updated function warn) committed by lskatz   -   updated function warn

  updated function warn
• Oct 28, 2008

  r38 (updated warn) committed by lskatz   -   updated warn

  updated warn
• Oct 28, 2008

  r37 (updated function warn) committed by lskatz   -   updated function warn

  updated function warn
• Oct 28, 2008

  r36 (updated errors) committed by lskatz   -   updated errors

  updated errors
• Oct 28, 2008

  r35 (expanded on function blastProgram) committed by lskatz   -   expanded on function blastProgram

  expanded on function blastProgram
• Oct 27, 2008

  r34 (added formatdb) committed by lskatz   -   added formatdb

  added formatdb
• Oct 21, 2008

  r33 (updated version number for today's work.) committed by lskatz   -   updated version number for today's work.

  updated version number for today's work.
• Oct 21, 2008

  r32 (added correct phred path) committed by lskatz   -   added correct phred path

  added correct phred path
• Oct 21, 2008

  r31 (these files might not work but I wanted to upload them to sy...) committed by lskatz   -   these files might not work but I wanted to upload them to sync up

  these files might not work but I wanted to upload them to sync up
• Oct 21, 2008

  r30 (biophpConstant is not overwritten by function loadConfig any...) committed by lskatz   -   biophpConstant is not overwritten by function loadConfig anymore. The config array and the biophpConstant array are now merged.

  biophpConstant is not overwritten by function loadConfig anymore. The config array and the biophpConstant array are now merged.
• Oct 21, 2008

  r29 (first test files uploaded) committed by lskatz   -   first test files uploaded

  first test files uploaded
• Oct 21, 2008

  r28 (initial upload) committed by lskatz   -   initial upload

  initial upload
• Oct 21, 2008

  r27 (added the config file parsing) committed by lskatz   -   added the config file parsing

  added the config file parsing
• Oct 21, 2008

  r26 (should run now) committed by lskatz   -   should run now

  should run now
• Oct 21, 2008

  r25 (the file still doesn't do anything, but at least it is parse...) committed by lskatz   -   the file still doesn't do anything, but at least it is parseable.

  the file still doesn't do anything, but at least it is parseable.
• Oct 21, 2008

  r24 (initial upload. This file doesn't really do anything yet.) committed by lskatz   -   initial upload. This file doesn't really do anything yet.

  initial upload. This file doesn't really do anything yet.
• Oct 21, 2008

  r23 (autoload function now does a require_once for two different ...) committed by lskatz   -   autoload function now does a require_once for two different kinds of paths while reading the include_path.

  autoload function now does a require_once for two different kinds of paths while reading the include_path.
• Oct 21, 2008

  r22 ([No log message]) committed by lskatz   -   [No log message]

  [No log message]
• Oct 21, 2008

  r21 (elaborated on the __autoload function) committed by lskatz   -   elaborated on the __autoload function

  elaborated on the __autoload function
• Oct 21, 2008

  r20 (Added constant BIOPHP_VERSION, removed comments at the bott...) committed by lskatz   -   Added constant BIOPHP_VERSION, removed comments at the bottom

  Added constant BIOPHP_VERSION, removed comments at the bottom
• Oct 21, 2008

  r19 (this file is unneccessary if we have the zip file) committed by lskatz   -   this file is unneccessary if we have the zip file

  this file is unneccessary if we have the zip file
• Sep 10, 2008

  r18 (removed biophp.zip and added biophp.tar.gz) committed by lskatz   -   removed biophp.zip and added biophp.tar.gz

  removed biophp.zip and added biophp.tar.gz
• Sep 10, 2008

  r17 committed by lskatz
• Sep 10, 2008

  r16 (initial upload of biophp.zip) committed by lskatz   -   initial upload of biophp.zip

  initial upload of biophp.zip
• Sep 10, 2008

  Introduction Wiki page deleted by lskatz
• Sep 10, 2008

  Documentation Wiki page edited by lskatz
• Sep 10, 2008

  Documentation Wiki page edited by lskatz
• Sep 10, 2008

  Documentation (One-sentence summary of this page.) Wiki page added by lskatz
• Sep 10, 2008

  Introduction Wiki page edited by lskatz
• Sep 10, 2008

  Introduction Wiki page edited by lskatz
• Sep 10, 2008

  Introduction Wiki page edited by lskatz
• Sep 10, 2008

  Introduction (One-sentence summary of this page.) Wiki page edited by lskatz
• Sep 10, 2008

  Introduction (One-sentence summary of this page.) Wiki page edited by lskatz
• Sep 10, 2008

  PageName Wiki page deleted by lskatz
• Sep 10, 2008

  Introduction (One-sentence summary of this page.) Wiki page added by lskatz