News: We are again accepted to the Google Summer of Code!!!
please find all information
here and discuss ideas in our
students forum
biographer
is a biological network layout and visualization tool which has been developed at the Theoretical Biophysics Group in Berlin as part of the Google Summer of Code 2011.
It consists of a layout algorithm C/C++ library (biographer-layout) which creates an graph layout optimized for biological networks, especially for bi-partite reaction graphs and a Javascript web component (biographer-visualization) for interactive in-browser visulalization of those networks. A server component (biographer-server) puts all sub projects together and provides network import from various sources and subsequent visualization.
The project wiki gives detailed descriptions on the sub projects and contains the build instructions.
The current version of the editor provides import and export functions as well as editing and visualization options.
NetworkExplorer is a project demo which visualizes the Network data from the Reactome and PID databases. The network can be explored by clicking through the different pathways.
If you have questions about the project you can contact us via the public mailing list biographer@googlegroups.com. If you would like to contact the developers directly please use biographer-dev@googlegroups.com.
contributors
The following people contributed to the Biographer project in various ways.
- Thomas Handorf
- Marvin Schulz
- Falko Krause
- Matthias Bock
- Ben Ripkens
- Acer Wei Jing
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