BEAST v2.0 MCMC and evolution libraries for Bayesian phylogenetic analysis

Beast 2 is a complete rewrite of Beast 1, with the aim of eventually replacing it.

Curious and adventurous users can try it. Any feedback is appreciated.

Selected add ons:

Species trees from SNP and AFLP analysis http://code.google.com/p/snap-mcmc/

Utilities http://code.google.com/p/beastii/

BMA http://code.google.com/p/subst-bma/

BDSSM http://code.google.com/p/bdssm-beast2/

Protein evolution http://code.google.com/p/evoprotein

Demographic model http://code.google.com/p/coalsir

Beast classic http://code.google.com/p/beast-classic

Phylogeography http://code.google.com/p/beast-geo

Graphics http://code.google.com/p/beast-graphics/

Reversible-jumb Based substitution model http://code.google.com/p/rb-beast/

For further information and documentation, check out the Beast2 wiki