Some simple useful tools and libraries for Sequence Analysis and Processing. This project belongs to [http://www.fudepan.org.ar FuDePAN].

= Introduction = jTracert will allow you to generate sequence diagrams directly from your application runtime! This gives you a lot of advantages: * Understand the code created by your colleagues/partners in a short time * Rapidly generate documentation for your partners or users. * Easily ...

=Screenshots:= || http://lh3.ggpht.com/_AWkLjPyyn0g/SpMal_Ykm6I/AAAAAAAAATw/hiHn39DcuNc/s200/example.png || http://lh6.ggpht.com/_AWkLjPyyn0g/SszoyTlMp0I/AAAAAAAAAVw/HUeyJSKOz0M/s200/readUsage.png || =Requirements:= * velvet (velveth,velvetg should be in your PATH) * R (with Sweave, usuall...

A project to create an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution. The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesia...

Web based cross platform and cross browser DNA sequence editing and analysis tool. VectorEditor Draft Version 1.09.12.19: Circular View and Sequence View. With features, cutsites, orfs displayed. http://silentsoftware.net/VectorEditor1.png Linear View and Sequence View. With feature...

Encoding nucleotides sequences by n-gram method using Java

Please see [http://taxondna.sf.net/ our Sourceforge page] for installation information and links to downloads of this software. You can also [http://code.google.com/p/taxondna/downloads/list download the latest (alpha) version], [http://code.google.com/p/taxondna/issues/list view active issues], and...

IceLogo builds on probability theory to visualize significant conserved sequence patterns in multiple peptide sequence alignments against background (reference) sequence sets that can be tailored to the studied system and the used protocol. The unique advantages of iceLogo compared to other sequence...

This project uses Java instrumentation capabilities to captures the dynamic execution flow of a Java program, which enable you to better understand the execution of your Java program.<br> The program generates a set of .dot files which can bee visualized using the tools from (http://www.graphviz.or...

I am releasing an early version of video parsing utility I wrote that takes frames from a video and creates an image montage. I developed this utility to help me break down fast-moving video footage into a sequence of images that I could study in greater detail. (In my case, I use it to create image...