The PhyloWidget tool is a Java-based program for creating, annotating, and visualizing phylogenetic trees. This page contains minimal information about PhyloWidget, and is intended primarily for access to the SVN repository. Further information, including documentation, can be found at http://www...

Phyutility (fyoo-til-i-te) is a command line program that performs simple analyses or modifications on both trees and data matrices. Makes use of JADE (PEBLS) and JEBL libraries. Please see the [NEWS] page for info concerning updates, etc. *Please use this citation when using Phyutility* [http://...

= Summary = This project will provide a light-weight API for importing, exporting, and modifiying [http://www.nexml.org/ NeXML] documents using C++. It provides a set of classes that represent important constructs such as otu, network, tree, matrix, etc. It also contain a compatibility layer to m...

Conservation managers are faced with the problem of having many species that are in need of conservation but limited funds to allocate to them. This raises the question of which species should be protected. One framework for prioritising species for conservation is the Noah's Ark Problem (NAP). The ...

I will use PERL to create a set of command line programs for topological queries in BioSQL. The goal of this project is to create an interface that is suitable for high throughput creation and modification of SQL based phylogenies. I will use this interface to further my research on the classificati...