Taxomanie is an open-source project which provides tools for handling tree collections using taxonomic information. Currently, it contains : * DjangoPhylocore a django application wich aims to manipulate various kind of taxonomy related data(taxa, phylogenetic trees, trees collection...). ...

A project to create an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution. The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesia...

GARLI, Genetic Algorithm for Rapid Phylogenetic Inference is a program for inferring phylogenetic trees. Using an approach similar to a classical genetic algorithm, it rapidly searches the space of evolutionary trees and model parameters to find the solution maximizing the likelihood score. It imp...

Create geophylogenies on the fly! http://geophylo.appspot.com/

_Names on Nodes_ provides an automated bridge between biology and biological nomenclature. Phylogenetic definitions are stored as [http://www.w3.org/Math/ MathML], to be applied to phylogenetic hypotheses. Rank-based definitions may also be applied, using distance metrics. The principles of this app...

==MrsRF== Welcome to the GoogleCode page for *MrsRF*! Some quick facts: * *MrsRF* stands for (M)ap (R)educe (S)peeds up (R)obinson (F)oulds. * *MrsRF* is a scalable, efficient multi-core algorithm that uses [http://labs.google.com/papers/mapreduce.html MapReduce] to quickly calculate ...

FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures

This is a small CLI PHP script that filters and pre-processes phylogenetic trees from “HOGENOM” database according to particular Requirements Specification (available only in Russian). This script seems to be of no common interest ( = made just for myself ) but may contain some useful parts (e.g. tr...

Brownie is a program for analyzing rates of continuous character evolution on a tree or set of trees. See http://www.brianomeara.info/brownie for more info. This version incorporates trait evolution and species delimitation methods. Funding for its development has come from a University of Cal...

=HashRF= *Phylogenetic reconstruction techniques are primarily based on computational heuristics and often produce a large number of candidate evolutionary trees. It is necessary to have an efficient method to take these trees as input and return the relationship among them. We design a hash-ba...