| Projects on Google Code | Results 1 - 10 of 15 |
This program expands a fasta alignment containing pseudonucleotids, in a cartesian-product fashion so the resulting alignment contains only real nucleotides (A, T/U, C, G).
Python version 2.x is required. The source code is *NOT* compatible with Python 3.x.
This project belongs to [http://www....
scripts and tools to process and analyze bioinformatics data
1. BLAST parser
2. Sequence processor and translator
programming scripts (perl) for producing summary species report from FASTA format input files
see http://code.google.com/p/thermus/wiki/ThermusHome
scripts and protocols to work with Illumina short DNA reads
Set of simple scripts for bioinformatics written in perl without additional bioperl support.
If you would like to have website which actualy could run this scripts please don't hestitate to contact me.
==News==
*12/22/2009: It has been reported to me that the pig-tailing of primers on the OS X platform is causing problems (i,e. no primers are being tagged). This issue may easily be overcome by choosing NOT to pigtail primers. If this is unacceptable, please use version 0.8.1, instead. However...
bioinformatics stuffs. any feedback or contributions would be *greatly* appreciated i can move code to github/bitbucket to facilitate that if it helps:
*NOTE*: as of 2009/10/13 some modules which previously lived here have been moved to [http://bitbucket.org/brentp/biostuff/ bitbucket]
* bio...
bioinformatics,
cython,
bio,
gff,
genomics,
python,
genomic,
fasta,
biology,
randomness,
tests,
genomics
A simple library to store and query genomic features and sequence.
* Find neighbors of a given feature up or downstream, or on a given strand.
* Use a feature to slice out sequence from an associated fasta file.
Genedex uses numpy memmaped arrays for fasta slicing of fasta files without creat...
Please see [http://taxondna.sf.net/ our Sourceforge page] for installation information and links to downloads of this software. You can also [http://code.google.com/p/taxondna/downloads/list download the latest (alpha) version], [http://code.google.com/p/taxondna/issues/list view active issues], and...
Biopipe is a collection of tools for bioinformatics. Features will include:
* Tools for genomic databank creation and visualization.
* Web interface for genomic data.
* Tools for automating bioinformatic pipeline routes.
* Nucleotide Secondary Structure visualization.
* Format converters (...