The Virtual Genetics Lab (VGL) is a simulation of transmission genetics that approximates, as closely as possible, the hypothesis-testing environment of genetics research. In this lab, students cross hypothetical creatures and examine the progeny in order to determine the mechanism of inheritance o...

*This project hosts source code related to the Pathway Commons project.* Pathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common l...

Program to analyze biological networks, like metabolic network.

Exercises

This project compares ActionScript 3.0 concepts and structure to the 7 criteria for biological life; 1. Homeostasis 2. Organization 3. Metabolism 4. Growth 5. Adaption 6. Response to Stimuli 7. Reproduction

==What is CHARMMing== CHARMMING is a public domain web portal to the [http://www.charmm.org CHARMM] molecular simulation program, which must be licensed separately. It includes functionality for uploading structures, visualizing them, and performing minimization, solvation, and classical molecula...

=Introduction = mzRock is a machine learning toolkit for automation of mass spectroscopy data analysis. The program was designed to work with chromatograms obtained from triple-quad instruments, but it could be easily adapted to work with other type of instruments. The main goal of the softwa...

http://www.atgc-montpellier.fr/phyml PhyML is a software that estimates maximum likelihood phylogenies from alignments of nucleotide or amino acid sequences. It provides a wide range of options that were designed to facilitate standard phylogenetic analyses. The main strengths of PhyML lies in th...

The BioBrick Studios are integrated development environments (IDE) that support review, annotatation, design, and implemention of standard biological parts on desktop and mobile computing platforms (Mac OS X, iPhone OS, cross-platform using wxPython). Our core goals are to develop programming langu...

The idea is to examine the location and spatial distribution of protein phosphorylation sites. We are going to combine: * large-scale data on protein phosphorylation sites * protein structures or homology models * structure (models) of protein-protein interactions * sequence informati...