===News=== * *In development:* a tool for scoring CNVs and runs of homozygosity using linkage results. * *homruns*: Version 0.1.2 fixes a number of path issues that prevented homruns from working on Windows systems. * *homruns*: Version 0.1.1 has been released, replacing 0.1 and fixing some...

This tool takes one or more gene sequences and generates any number of single-mutation, neighboring genotypes. You may optionally generate synonymous mutations, non-synonymous mutations or both. Mutations in the sequence's start and stop codons are excluded. Mutations that generate in-frame stop cod...

Allelogram is a program for normalizing and binning microsatellite genotypes. I wrote the first version at Sequana Therapeutics; that one was integrated into our LIMS and used a Sybase database. Later I wrote one in C++ on (Classic) Mac OS that works from text files. This version is like the seco...

WEAVR stands for Web-Enabled Alignment Viewing and Rendering. WEAVR is a browser-based interface for viewing genetic data in map form. The end user can navigate aligned short sequence read data with a draggable and zoomable interface.

This project implements a spreadsheet whose functions operate on nucleotide and amino acid sequences.

Alignment-Free Sequence Comparison with CUDA

hacking snp.plotter and reverse R

Project Hosting for CEPH and CNG = OPERON = * Dev Mailing list : http://groups.google.com/group/operon-dev == Wiki Pages == * [Architecture] * [BerkeleyDBNotebook] === Databases === * [UTermsDB] * [XTermsDB]

The risk index is a method used to combine risk information from clinical and genetic factors in order to make a qualitative (i.e., "high risk" or "low risk") prediction about an individual's risk of developing a particular disease. THis project was created as the basis for a dissertation project by...

Genetics Helper is a suite of tools that allow you to perform simple calculations as well as SNP or Gene look ups on your Android devices.